rs50796026 SNP Detail

Summary

• ID
  rs50796026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90521035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTCTCT TCCTTGCTCA
  GTCATATGCC CTAGTTCTCT TGGAAGCCCT GGAGGACAGT GCTCACAGAT CCCAAAGCCC
  CTTCCATTCT TATATCCCTC ACCTAAGTTG CCCCGGCTGC CACCTGTGTT GGCTTGAGAC
  TGACTGCCTC AGGCAGGGGG GTGGTGAGAG AACTCTCTGC TATCAGCAGC ACTGACTAGC
  Y
  CCTCTGTCAA ACAGCTTCTT CTAGCCCAGT GATCAGTCAT GGCATGCCCT CTGGATCAGG
  CCATTGGCCT TCTCGTGGCC ATCTTCCACA AGTACTCTGG CAAGGAAGGT GACAAGCACA
  CCCTGAGCAA GAAGGAGCTG AAGGAGTTGA TCCAGAAGGA GCTCACCATT GGCTCCGTGA
  GTAGCCCCTG TCCCGGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424270	NES15923478	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50796026					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424270	NES15923478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90521035 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13468	CpG island 13468			362 bp distal
Gm57853	predicted gene, 57853			Intron
				Noncoding-Transcript-Variant
Rr397814	regulatory region 397814			1693 bp upstream
Rr580416	regulatory region 580416			1345 bp distal
Rr580417	regulatory region 580417			413 bp distal
Rr580418	regulatory region 580418			919 bp distal
Rr580419	regulatory region 580419			1854 bp proximal
S100a5	S100 calcium binding protein A5			1948 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)			Intron
				Noncoding-Transcript-Variant
Tssr30242	transcription start site region 30242			1432 bp downstream
Tssr30243	transcription start site region 30243			863 bp downstream
Tssr30244	transcription start site region 30244			847 bp downstream
Tssr30245	transcription start site region 30245			749 bp downstream
Tssr30246	transcription start site region 30246			571 bp downstream
Tssr30247	transcription start site region 30247			536 bp downstream
Tssr30248	transcription start site region 30248			436 bp downstream
Tssr30249	transcription start site region 30249			192 bp downstream
Tssr30250	transcription start site region 30250			within coordinates
Tssr30251	transcription start site region 30251			47 bp upstream
Tssr30252	transcription start site region 30252			618 bp upstream
Tssr30253	transcription start site region 30253			642 bp upstream
Tssr34246	transcription start site region 34246			683 bp downstream