rs50788809 SNP Detail

Summary

• ID
  rs50788809
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138784153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG AACAATTATT TGTAGAGAGA
  T
  TATCTTGTGT ATTGTATGGA TGCTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135960452	ENSMUSSNP231692	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320982572	CHEV_3_138741356	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50788809					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138784153 () rs orientation: forward

Symbol	Name	Function Class
Gm56773	predicted gene, 56773	1851 bp downstream
Rr586244	regulatory region 586244	1805 bp distal
Rr586245	regulatory region 586245	171 bp distal
Rr586246	regulatory region 586246	1531 bp proximal