rs50771419 SNP Detail

Summary

• ID
  rs50771419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT CGGTACCATT TTATATCATT
  Y
  TTACTATTTA ATGATACTCA GACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136016155	ENSMUSSNP6992659	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50771419					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326809 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	Intron
Gbp2b	guanylate binding protein 2b	1869 bp downstream
Gm54185	predicted gene, 54185	1766 bp upstream
Rr398088	regulatory region 398088	865 bp downstream
Rr586458	regulatory region 586458	436 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32227	transcription start site region 32227	421 bp downstream
Tssr32228	transcription start site region 32228	383 bp downstream
Tssr32229	transcription start site region 32229	344 bp downstream
Tssr32230	transcription start site region 32230	315 bp downstream
Tssr32231	transcription start site region 32231	298 bp downstream
Tssr32232	transcription start site region 32232	225 bp upstream
Tssr35947	transcription start site region 35947	1867 bp upstream