rs50768493 SNP Detail

Summary

• ID
  rs50768493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58943889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGG TATTTTGAGC CATATAATTC
  Y
  TTGGTGTGTC TGCTCGCGTG AATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146397941	ENSMUSSNP6019666	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321139697	CHEV_4_58956761	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50768493					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58943889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	within coordinates
Rr592951	regulatory region 592951	251 bp distal
Rr592952	regulatory region 592952	within coordinates
Tssr37403	transcription start site region 37403	251 bp downstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	Intron