rs50752583 SNP Detail

Summary

• ID
  rs50752583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119239652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCTAGT GAACACTTTT
  GCACGTCCAT ACAGACCCTC TGACGCATCC AACACTCAAT GAAGCAGTTC CTCAGCCACG
  CGTGCACGCA CCCGATGCTT TATTATAAAG CCGGAGAGAC AGACACCTCA ACTCTTAAAG
  CTAAGGACAC CCTACATTTT TCTTGATTTT CTTACTATGA GAGCACCATT CCGCACAAGA
  Y
  ACTGCCAATA GACATGTTAA TGTGGATGGG GGAAAGGGGC CTCAACCCTA GAGAAAGAAC
  CAAAGGCAAC CAGGAATGCC GGGAGCAAGA GACAGTTTTC CCAGGGAAGA GCCACCACTG
  GTTATCAAAT GCCAAGTGGG CAGCCCTGAA GATACACAAA TGCTAGTAAC ATTATCCAGG
  CTGAGCAGGA TGCAGTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147328480	ENSMUSSNP174177	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50752583					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119239652 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc30	coiled-coil domain containing 30			Intron
				Noncoding-Transcript-Variant
Rr598572	regulatory region 598572			774 bp distal
Tssr43113	transcription start site region 43113			1277 bp downstream
Tssr43114	transcription start site region 43114			1350 bp downstream
Tssr43115	transcription start site region 43115			1373 bp downstream