rs50740745 SNP Detail

Summary

• ID
  rs50740745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67658232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCAAAA ATCTAGCTTC
  CAGGAAATTA ATAAATATCC TCAATTAATT TCAGGACGAC AGTAGTGAAT ATCTCTTAGC
  TGGTTATCCT GAATCAAGAA AGAAATGTGG GTTCCAACTC AAGACAACCT AACCCCTCTT
  ATCAGCTTTG AAGTTTTTTC CTGGAGTTGC TGGCAAGGAG ACTGGAAAAG TGGAAATCCA
  R
  ACAGAGAGAT CTTTTTATAT CTTGTGCTCT GGGTAGCAGC ATCTCCAGCC TTAACAGCAT
  CTGTATTTTA GAACCGAGAG AGTAAACCCA TTTTAGTGCA TCCCCGTCCC TGCCCCCATC
  CCCATGTAAA CTTCCTGTCT CTTAGTCCTA TGGAAGAGGG TTCTCTTTTC ACAGACGCAG
  CCTTAAAAAA AAAAGTATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss60893883	NES15948086	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs50740745					SNP	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60893883	NES15948086	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67658232 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Rr379537	regulatory region 379537	671 bp upstream
Rr631677	regulatory region 631677	215 bp proximal