rs50738092 SNP Detail

Summary

• ID
  rs50738092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25788329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGTGTGGT CTAAGGACCA AGACCCCAAT TCTCCATCTT
  TCCCGAAGTC CCCCTTTCCA GCACTATTTG CTCATCCAGT CACCCACCAC TGCTACCACC
  R
  CCGCCGCTAC CACCACCACC ACCAATCTCT CTCAAGAAAG ACAACAGGAC CCAGTGAAAA
  CTATACTTCG ACAAAGGCAA GGAAGGCTTT CTGGAAACCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss60552848	NES16573400	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs50738092					SNP	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552848	NES16573400	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25788329 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cerox1	cytoplasmic endogenous regulator of oxidative phosphorylation 1			1456 bp upstream
Rr523606	regulatory region 523606			1364 bp distal
Rr523607	regulatory region 523607			1324 bp proximal
Rr523608	regulatory region 523608			1685 bp proximal
Rr523609	regulatory region 523609			1799 bp proximal
Sox8	SRY (sex determining region Y)-box 8			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr143165	transcription start site region 143165			1467 bp upstream
Tssr143166	transcription start site region 143166			1519 bp upstream
Tssr146845	transcription start site region 146845			1323 bp downstream