rs50729252 SNP Detail

Summary

• ID
  rs50729252
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28316064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCT GAGTACTTGG GTGGGCGGGG
  C
  GGGGGGGGTC ATTTGCAGGA CAATG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134712121	ENSMUSSNP3037836	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50729252					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28316064 () rs orientation: forward

Symbol	Name	Function Class
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	810 bp proximal
Rr574556	regulatory region 574556	1739 bp proximal
Tnik	TRAF2 and NCK interacting kinase	1298 bp upstream
Tssr28643	transcription start site region 28643	1290 bp upstream
Tssr28644	transcription start site region 28644	1316 bp upstream
Tssr28645	transcription start site region 28645	1440 bp upstream
Tssr28646	transcription start site region 28646	1481 bp upstream
Tssr28647	transcription start site region 28647	1508 bp upstream
Tssr28648	transcription start site region 28648	1517 bp upstream
Tssr28649	transcription start site region 28649	1652 bp upstream