rs50715439 SNP Detail

Summary

• ID
  rs50715439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CATTTTGTAT CACATACATC CCCTACTGGA TATTCTTAGT
  TGTGTGCTCA TAAGTAATTC AAAGATGTAG CTTGCTCTAA GCTGGGATTG GCATGTTATA
  R
  ACATGATAAA AATCTGAACA TATCCATGGA ACACAGCTCC TAGGGCCTCA TGCTATCTGC
  AGACATTGGT TCCCAGGGTA GACAATGGGC AGTGCCCAAT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136016038	ENSMUSSNP4706282	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50715439					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324414 () rs orientation: forward

Symbol	Name	Function Class
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1229 bp upstream
Rr586457	regulatory region 586457	82 bp proximal
Rr586458	regulatory region 586458	1459 bp proximal
Rr586459	regulatory region 586459	1960 bp proximal
Tssr32216	transcription start site region 32216	468 bp downstream
Tssr32217	transcription start site region 32217	430 bp downstream
Tssr32218	transcription start site region 32218	376 bp downstream
Tssr32219	transcription start site region 32219	339 bp downstream
Tssr32220	transcription start site region 32220	325 bp downstream
Tssr32221	transcription start site region 32221	307 bp downstream
Tssr32222	transcription start site region 32222	251 bp downstream
Tssr32223	transcription start site region 32223	194 bp downstream
Tssr32224	transcription start site region 32224	140 bp downstream
Tssr32225	transcription start site region 32225	181 bp upstream
Tssr32226	transcription start site region 32226	229 bp upstream
Tssr32227	transcription start site region 32227	1943 bp upstream
Tssr32228	transcription start site region 32228	1994 bp upstream
Tssr35947	transcription start site region 35947	522 bp downstream