rs50696933 SNP Detail

Summary

• ID
  rs50696933
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41116748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAACAGT TTGAGCTGGC
  AGAAATGTGG TAACACGTTC AAGAGAGCTA TACTGCCATC ACTAATTAGC ACTGTGGAAA
  AGTGAAAGAG TCATACAGCC CTGTCTATGT CATGGGAATC ACAGGAGGCA CCAGCTAATT
  AGGGACTCAG AGCCTTGCAA GTGGTTTAAG ATCGTGCAAA GTACTGTGTG TTGGCCCTCC
  W
  CAGCAGGACA GGTCTGATTC TTAAAGCCTC ATTTCTTCTT AGAAGATTCG GGGATAGGTG
  TGAGGCCAGT ATCTATCTAC TAATACATTT ACTTATCTAC CTGTAACCAG CAGAAAGTCC
  TGGACCCACA AAACAATTCT TTGTGCATAA AGGCAAATAA AATCGCACAA GATTTTATGA
  AAGTGTCTCT GGGTAGATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60399302	NES15900083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50696933					SNP	T	T	T	T	T	A	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399302	NES15900083	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41116748 () rs orientation: forward

Symbol	Name	Function Class
Gm40038	predicted gene, 40038	within coordinates
Gm64942	predicted gene, 64942	within coordinates
Rr575903	regulatory region 575903	1458 bp distal
Rr575904	regulatory region 575904	1410 bp proximal