rs50674511 SNP Detail

Summary

• ID
  rs50674511
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58942970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC ATGAGGACCG TACCTTGAGC
  C
  GCGAGCTGAA ATAAATCCCT TTCCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146397907	ENSMUSSNP6983814	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321139688	CHEV_4_58955842	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50674511					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58942970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	468 bp proximal
Rr592951	regulatory region 592951	168 bp proximal
Rr592952	regulatory region 592952	669 bp proximal
Tssr37403	transcription start site region 37403	605 bp upstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	658 bp upstream