rs50666988 SNP Detail

Summary

• ID
  rs50666988
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168009299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTCCTT TCAGAACCTC
  TCAGGCCTTT CCTCCTGACT AGACTTAGGA AGACTCCAGA GAAAGGTGCC CCAGCCCCCA
  TCACAGCAAG GGCTCAGACG GGGCGGGACT TGGTCACGTG GGTGGTGTGT GTCCGAGGGC
  TGTTAGCTGG GTTATCCTCT CTACACCCCC ACCTTTCACT GACTTCCTGG GAGCCGGTCC
  S
  GGAGTGCTGA GGGAGCAGGC CAGTCAGGCT TCTGGTCCTG CTGGCCTCTT GAGTGTATGC
  TTTCTTTGGG AGGTGAAAGC CAGTTCTTGC AGATGCATAA CTCTCGACCA CTGAGTCACA
  CCCCCAGCCC TTTGGGGGAC AGGATCTCTG TGTAACGCAG GCTGCCCTTA AACTCATGAT
  AAACTCCTGC CTCCACCCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148267258	ENSMUSSNP6747435	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50666988					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168009299 () rs orientation: forward

Symbol	Name	Function Class
Gm52960	predicted gene, 52960	within coordinates
Gm54130	predicted gene, 54130	1059 bp upstream
Rr570912	regulatory region 570912	within coordinates
Rr570913	regulatory region 570913	1205 bp proximal
Rr570914	regulatory region 570914	1842 bp proximal