rs50654267 SNP Detail

Summary

• ID
  rs50654267
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141809682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG AGACCACTGC CCCAACCCTC
  M
  CACCAGAATT ATCTGAATGG TAAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147748389	ENSMUSSNP2991867	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50654267					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141809682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	1387 bp proximal
Rr603986	regulatory region 603986	1873 bp distal
Rr603987	regulatory region 603987	within coordinates
Rr603988	regulatory region 603988	1437 bp proximal
Rr603989	regulatory region 603989	1929 bp proximal
Rr603990	regulatory region 603990	1980 bp proximal
Tmem51	transmembrane protein 51	Intron
Tmem51os1	Tmem51 opposite strand 1	1927 bp upstream
Tssr44419	transcription start site region 44419	1826 bp downstream
Tssr44420	transcription start site region 44420	1850 bp downstream