rs50639592 SNP Detail

Summary

• ID
  rs50639592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41444072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAAGGA CAATCTCACG
  TGCTCCAGAA CAAACGTCTT GTTCCATTTC TGTTTTTCCA CTTCAGGCTC CTTTATTTTG
  CCTGGGCTAC TGTTGACCCT CGTGGGGTTT TAACATCGCT GATGTCCTCT AACTGTGCTT
  GCTTTTGACG CCTCTCAAGT GCCCTCTCCA TCCTGAACCA GGTACCTCGG GCTCCCTTGC
  R
  CAGAAACCTG TCACTTTCCT GCCCTGGAGA AGTCACAGAG ACTAGCAAAG CCCATGATGG
  ACTGAGTGCT GAGTTGCAGG TTAGGGACCC AAAGTCCTGC TAAAGAAAAT ATTGACACAT
  GCTAAGTGTA TAAAAGACTT TGTTCAGAAC CACTGTGAAA GGTGTCAAGA TTATTACAAG
  TGGGGAGAAG ACTGGGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397839	NES15901400	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50639592					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397839	NES15901400	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41444072 () rs orientation: forward

Symbol	Name	Function Class
Platr4	pluripotency associated transcript 4	within coordinates
Rr575951	regulatory region 575951	993 bp distal
Rr575952	regulatory region 575952	within coordinates