rs50609135 SNP Detail

Summary

• ID
  rs50609135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41442154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAATATGTCT TAGTTAGGAT TTTACTGCTG TGAACAGACA
  CCATGACCAA GGACATGTCC TTATAAGGAC AACATTTAAT TAGGGCTGGC TTACAGGTTC
  R
  GAGGTTCAGT CCATTGTCAT CAAGGCCAGA ACATGGCAGC ATCCAGGCAG GTATAGTGCA
  GGCAGAGCTG AGAGATCTAT GTCTTGTACC AAAGGCAAAC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137105541	ENSMUSSNP1264802	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50609135					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41442154 () rs orientation: forward

Symbol	Name	Function Class
Gm6069	predicted gene 6069	1524 bp downstream
Platr4	pluripotency associated transcript 4	within coordinates
Rr575951	regulatory region 575951	524 bp proximal
Rr575952	regulatory region 575952	1778 bp proximal