rs50598725 SNP Detail

Summary

• ID
  rs50598725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52165863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAACTTA GTAGGACAGA
  GGCAAGAAAG GGTTTTTGGC CTCAGCCACC GGTACAGTGG CTAAAAGCTA CTGTCTTTTG
  AAGCAACTTT CTCACCCAAA CACCCCGATT GGGACCCCAG CATGCACACA GGTTCTCAGA
  CCCTGGACAC TTTTCACCTG TACCTTATAA GTGGAAATCG GGGTGCCCCT CGAAAAACCA
  W
  TAATTTGTGT ACGACTTCTG AAGTTCCTTA AGGGCGGTTC TAAAGCGATG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA CCCCTTAAAA TTGTATACCT CTATTGACCC
  ACTGGCTCCG GAAAATGCTG GGACATTAAA TTCAACTTTG TCACTCAATC ACCTCCAGAC
  AAAACAAAAA CAAACAAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410287	NES15916430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50598725					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410287	NES15916430	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52165863 () rs orientation: forward

Symbol	Name	Function Class
Gm30125	predicted gene, 30125	1946 bp downstream
Gm38132	predicted gene, 38132	1933 bp downstream
Rr576482	regulatory region 576482	within coordinates
Rr576483	regulatory region 576483	589 bp distal
Rr576484	regulatory region 576484	185 bp proximal