rs50564016 SNP Detail

Summary

• ID
  rs50564016
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106554020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGAGCT GCTATTGTGT
  CACTGGGGGC GGGGAGGAGT GCAACCAGAT TTGCCTTGCT CAGCCAATGG GCCGTGAGCA
  TCCCAGGGTC GTAGGGAAAC TGAGTCCGAG TCCCGGCAAC CTTTCTCTGG ACACTACTAT
  ACTTCGCCAG ATTTAGACTA CATATCCCAC AATGCATAGC GCTGTAGAAG CCGGCCAACG
  M
  GGGTTCCTGG AGAACTTCGG AAGATGTAGT ACATCACTGC TCACTCACAA GCCAGTACAA
  CGAAGACTCC GAACCACTGA GAACTACCAT TCCCGACTGG CCAAGTGGCC AGACCTCGAA
  GCTCGCCTTC CTCGTCCACG GTCTCACTTT ATTCTTCTGC CTCAGTTCTG TAGCTAATAT
  CAAATTTGCT GTATTGACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60658917	NES16259108	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50564016					SNP	A	A	A	A	A	C	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60658917	NES16259108	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106554020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20953	CpG island 20953	within coordinates
Ranbp10	RAN binding protein 10	Intron
Rr401097	regulatory region 401097	8 bp downstream
Rr669016	regulatory region 669016	within coordinates
Rr669017	regulatory region 669017	367 bp proximal
Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	343 bp upstream
Tssr79188	transcription start site region 79188	333 bp upstream
Tssr79189	transcription start site region 79189	365 bp upstream
Tssr79190	transcription start site region 79190	382 bp upstream
Tssr82694	transcription start site region 82694	1056 bp upstream
Tssr82695	transcription start site region 82695	174 bp upstream
Tssr82696	transcription start site region 82696	205 bp downstream
Tssr82697	transcription start site region 82697	229 bp downstream
Tssr82698	transcription start site region 82698	254 bp downstream
Tssr82699	transcription start site region 82699	292 bp downstream