rs50524652 SNP Detail

Summary

• ID
  rs50524652
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:12911996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACAATAG TTAATATGTC
  AACAATCATG TTCACATTGT TAAAAGATAT CATGTTTTCC TTTAGAGTAC CCAATTTTCT
  GGACGATGTT GGTTGTAAGG CAGTTTTCTT TTCACTCAGA GTCAGTCGGG GTCTGTCCAT
  CTGCACCACC TCTGTTCTAA GCACATCCCA AGTCATCACC ATCACTCCCA ATAATCCTAC
  K
  TTTGTCTCCT GGCTTAAGCC AAGACTCTCT ACATGGATTT TTTCTTCCTT ACTTTGCTCC
  TGGATTATTA ATCTACTTAT CTACGGGTTT ATGATTGACT TGGTAGTAGC CAAAACCAAT
  ATGACTCTCG TTGGCCGTGG ATTTTCACAT GGTTACTGTC AAAGAAAGAA ATTTGGGAAA
  CAAAATTCAG AATGGCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60970926	NES16158820	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50524652					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970926	NES16158820	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12911996 () rs orientation: forward

Symbol	Name	Function Class
Gm4879	predicted pseudogene 4879	834 bp upstream
Rr380415	regulatory region 380415	within coordinates
Vmn1r88	vomeronasal 1 receptor, 88	Coding-Synonymous