rs50511456 SNP Detail

Summary

• ID
  rs50511456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172392946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTAAGG CGCAGAAGGC
  ACGGGCTTGG CTAGCAAGGA TCACAGCTCC GATCCCGCGT GTCGGCTCCC GGTCTCTCCG
  GACGACATTA CTATGAGGCC TTACCTGAGA GTGTCACTTC CGCGGCGCGG CCGCCTCTTA
  AGGGAGTGAG AGGGGGATGA TCCTTGGGGC GGGGAAACGC GCCCTTCGTC GGCGTTGCGC
  R
  TTATCCGCGC TATTTGCGCG CCGCAGCGAC ATGGGAGGAG GGTTGTTGAA CGAGGGCGCT
  GTGCGCCGAG GTCGCCGCAC GCCGAACCCC TGGGGCACGG GTAACCGGAC TGTGGCGCGG
  AACGCGCTCT TGGCACCTCC AAGCGACGCA GCGCGGGAAC CTTCGCCAGA GGGCTCGAAG
  GATTCGTCCC CTCAGGTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148318938	ENSMUSSNP1656351	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320619389	CHEV_2_172376526	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50511456					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172392946 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12825	CpG island 12825			within coordinates
Rr571697	regulatory region 571697			1423 bp distal
Rr571698	regulatory region 571698			25 bp distal
Rr571699	regulatory region 571699			397 bp distal
Tfap2c	transcription factor AP-2, gamma			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr21966	transcription start site region 21966			1421 bp downstream
Tssr21967	transcription start site region 21967			1377 bp downstream
Tssr21968	transcription start site region 21968			259 bp downstream
Tssr21969	transcription start site region 21969			2 bp upstream
Tssr21970	transcription start site region 21970			477 bp upstream
Tssr21971	transcription start site region 21971			496 bp upstream
Tssr27948	transcription start site region 27948			86 bp upstream