rs50490849 SNP Detail

Summary

• ID
  rs50490849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144600674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTTCA CTCCTGGCTG
  CTGAGTGCAT AGGCTTTGTT GCTGCCAACC TTGCTGCCAG TCTTACTGAC ATAAGAACCC
  AGCTTCTACA GCTTTCCAAC ATGGACTGAA GAGCAGAAGC TCCCAGAAAT CCTCCAGGCC
  TTCGATGCCA GACTGAGACT TCTGCAGTAT CCAGGCTAAG CACTGAGCAG CTACAGGGTT
  Y
  TCAGCCTGTA GACAACTATT GTTGGACTAC CCAGCCTGTA CTGTGTGAAA CAAGCTAATG
  AATCCCATTT GAAATATATA TTCATTCTCT TAGTTCTGTT CCTCTAGAGA ACCCTAATAT
  AAATGATGTC TGGGCACACC TGAACTTTGG CATGGGGCTT TTCTTTAACC AAAAACTGGG
  GATCCAAAAT ACATCACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147838971	ENSMUSSNP6627005	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50490849					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144600674 () rs orientation: forward

Symbol	Name	Function Class
Gm57096	predicted gene, 57096	within coordinates
Rr604241	regulatory region 604241	1266 bp distal
Rr604242	regulatory region 604242	950 bp distal