rs50478043 SNP Detail

Summary

• ID
  rs50478043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161614172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT CTGGGCCACG ACTAAGAGGT
  R
  GAAGTTTCTC TATGCATTGT ATAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60335631	NES15842754	PERLEGEN	MM_PANEL2	f	SNP			G	A	G	G	A	G	A	G	G
ss145922197	ENSMUSSNP1354026	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs50478043					SNP	G	G	G	A	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335631	NES15842754	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161614172 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	Intron
Rr421846	regulatory region 421846	1745 bp proximal
Tssr14586	transcription start site region 14586	1756 bp downstream
Tssr14587	transcription start site region 14587	1846 bp downstream
Tssr14588	transcription start site region 14588	1861 bp downstream
Tssr14589	transcription start site region 14589	1869 bp downstream
Tssr14590	transcription start site region 14590	1886 bp downstream
Tssr14591	transcription start site region 14591	1897 bp downstream