rs50466975 SNP Detail

Summary

• ID
  rs50466975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152335773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTTGAG ATGCCATTCC
  TTTGTATTAG TTGGCTAAGT CTATAGTAAG ATTTTGATTC CTTTTTCATT TATTTCAGTG
  TATAGTTTTT GGTTGTTCTC GTCATGGTTT CTCTGGGTAT TGCAACTAAC AACTAAGTTT
  ATAATTAGTG TTCAGGTCGG TAGCTATGTA GTTTTAAGAG TGCATGAAGA CTTTGGTCCT
  R
  TATAGCTTTT TCTCTCCTTT TTATTTTCTT TAAATCACAA ATCATATGTG ATATCATGGT
  GTTCATTCAC TTATAATTAT TGCTTTATAA AGTAATATTT TAAATACTAT AGGCAAAATA
  TTTTATAAAA TTAAGATACT TCAACACTGA GAAAATAAGC AAAGAGGTGC TAATGGACAA
  AGAGGATCAA ACTATGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145731277	ENSMUSSNP2058301	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50466975					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152335773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			694 bp distal
Rr420465	regulatory region 420465			1757 bp proximal