rs50464608 SNP Detail

Summary

• ID
  rs50464608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148212708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC CCAGCCCAGC TCCAGAAACA
  Y
  AGGGACTTCC CAGCCACTTG CTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147993894	ENSMUSSNP6017078	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321417510	CHEV_4_147502360	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50464608					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148212708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15291	CpG island 15291	1821 bp proximal
Draxin	dorsal inhibitory axon guidance protein	Intron
Rr604596	regulatory region 604596	989 bp proximal
Rr604597	regulatory region 604597	1836 bp proximal