rs50433367 SNP Detail

Summary

• ID
  rs50433367
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106698163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTATCCTG CCGGTCTCCT CAAACATGGT ATACTTACTC
  TGCTCTGTGA GTGAGCCTTA GACTCTCATC AGTCCCTTTT CTTTTTTAAG CTCCTGACCA
  M
  GCTTTTGCTT TCGGATGCCC CCTGGGCACA GATCCTCACT CCCCACAGGA GCACATGGGT
  TTTTATTCAT TGCATGCATA GAGATTTGCT TCTCTGGAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147172734	ENSMUSSNP6911646	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss321247405	CHEV_4_106513571	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50433367					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106698163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14534	CpG island 14534	354 bp distal
Gm12746	predicted gene 12746	44 bp downstream
Gm31125	predicted gene, 31125	805 bp upstream
Gm57074	predicted gene, 57074	within coordinates
Rr376971	regulatory region 376971	within coordinates
Rr596839	regulatory region 596839	1898 bp distal
Rr596840	regulatory region 596840	871 bp distal
Rr596841	regulatory region 596841	719 bp distal
Rr596842	regulatory region 596842	301 bp distal
Rr596843	regulatory region 596843	within coordinates
Rr596844	regulatory region 596844	1664 bp proximal
Tssr38191	transcription start site region 38191	720 bp downstream
Tssr42648	transcription start site region 42648	916 bp upstream