rs50408005 SNP Detail

Summary

• ID
  rs50408005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTAAGAAC ATGCACTGCT CTTCCAAAGG ACCTGAGTTC
  AAGTCCCAAG CACCCACACC AGGAGGCTCA CAACTACCTG TAGTTCCAGC TCCAGAAAGA
  Y
  CCAACACCTC TGGCGCTGTG CTCACGTGCA CATATATATA TACACACAGA GAGACAAACC
  CCACATAATT TAAAATAAAA ACTAATCTTA AAAAAAATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135764326	ENSMUSSNP4315139	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C		C
ss320919478	CHEV_3_123088191	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50408005					SNP	T	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	453 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	479 bp upstream
Rr584510	regulatory region 584510	within coordinates
Rr584511	regulatory region 584511	648 bp proximal
Tssr35499	transcription start site region 35499	395 bp downstream
Tssr35500	transcription start site region 35500	652 bp downstream
Tssr35501	transcription start site region 35501	721 bp downstream