rs50406574 SNP Detail

Summary

• ID
  rs50406574
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCTCAGAGGC AAAGCTGACC AGCATTGAAA AGCTGCTTCT
  TCTTCTTCTC TAAAGGATTT CTCTTCAGGT AAGACAGAGG CAGGGGTGGA AAACTGTTTA
  S
  CAGACTGCTG GTTTACCCTA ACCAGAGGAG GCTGAAACCA GCACAGATGT GTGTGGCCCA
  GGGCTAGGTG ACAGAGGCAG ACTTTACCCT AGATGTCCCT G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136016137	ENSMUSSNP3729209	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50406574					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326602 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	Intron
Gbp2b	guanylate binding protein 2b	1662 bp downstream
Gm54185	predicted gene, 54185	1559 bp upstream
Rr398088	regulatory region 398088	658 bp downstream
Rr586457	regulatory region 586457	1865 bp distal
Rr586458	regulatory region 586458	229 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32225	transcription start site region 32225	1990 bp downstream
Tssr32226	transcription start site region 32226	1950 bp downstream
Tssr32227	transcription start site region 32227	214 bp downstream
Tssr32228	transcription start site region 32228	176 bp downstream
Tssr32229	transcription start site region 32229	137 bp downstream
Tssr32230	transcription start site region 32230	108 bp downstream
Tssr32231	transcription start site region 32231	91 bp downstream
Tssr32232	transcription start site region 32232	432 bp upstream
Tssr35947	transcription start site region 35947	1660 bp upstream