rs50399462 SNP Detail

Summary

• ID
  rs50399462
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47054616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC CAAAGTCCTC CAACTCCCTA
  A
  AGAGCTGGCT TGTTTCCTAA AGCAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148981248	ENSMUSSNP6434920	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324334791	CHEV_13_46996509	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50399462					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47054616 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			1451 bp upstream
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			within coordinates
Rr478996	regulatory region 478996			1623 bp proximal
Rr478997	regulatory region 478997			1729 bp proximal