rs50381872 SNP Detail

Summary

• ID
  rs50381872
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41116389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGACAT GGTCACCTGT
  AGAAGGTACC ATTCGTCACC TTCAGAAGCC TTCACGTGTT TTTACACTTA TAATTTACAT
  ATGTGCACAC AAACTGTGAT TCCCATTTGG TCAGATAGCT GTATTTTAAA ATGTCTTTGG
  ATGATGTTAG GAAATGATTT CTCATTTTAA TATCATTATA ACATTGTAGT CGCTAATCCT
  M
  GGGAGTAGTT TTGGAATGAA ACAATAAAGC ATTTTATTGA AACACAGTTT CATGTTGCTG
  GAGACTGATC TTAAACTTTT GATCCTCCTG CCTCCACCTC CTAGGTGTGG GACCTATGGA
  CATGTGCCAC CGTGGATGGC TTGAAAAGGA CAACGTCTAT GGAACAGTTT GAGCTGGCAG
  AAATGTGGTA ACACGTTCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60399305	NES15900088	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs50381872					SNP	A	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399305	NES15900088	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41116389 () rs orientation: forward

Symbol	Name	Function Class
Gm40038	predicted gene, 40038	within coordinates
Gm64942	predicted gene, 64942	within coordinates
Rr575903	regulatory region 575903	1099 bp distal
Rr575904	regulatory region 575904	1769 bp proximal