rs50374463 SNP Detail

Summary

• ID
  rs50374463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACAGGCT ATGCCTGAAC AGGAAGTCCC GCCTCCAGGA
  CGCCGAAGAT ATGATGTCAC ACGACGAGAC CCAATGGGGA TGTAGTGGTG GTTGAGGGCG
  R
  GGAGCCGCTT TTGGCTATCT TCTTAGTGCT TAAAGTCTTT CCTGAAGGGT TAGGCTCGGT
  TTTTTTGTTT TTTGTTTTTC CTGCTCATAA AAGAAGTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135764365	ENSMUSSNP5397114	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320919491	CHEV_3_123088997	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50374463					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	11 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	mRNA-UTR
Rr397990	regulatory region 397990	26 bp downstream
Rr584510	regulatory region 584510	159 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	407 bp upstream
Tssr35500	transcription start site region 35500	86 bp upstream
Tssr35501	transcription start site region 35501	69 bp upstream