rs50306827 SNP Detail

Summary

• ID
  rs50306827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150675784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAC AAAACAAAAC
  AAGATTAAAA AAGGAAGGAC TTATTTTTAA GAGATGTACT GTGAAATAAT ACCATTGAAA
  ACAAACTCTA ATTTCGACTA GTATATAGGG TTTTGTTTTT ATGAAAGTGG TTCATGAATG
  ATATTTAACT GTTTCAAGGT GACATATTTA AGGTAGGTAT CATTTTAAAG TGATTTATTG
  Y
  CACTGATTGT GAAATTAGCT GATTGTCTGT ATTAGCTGGT TTGTGGAACT TTATGCATAT
  TTCTGTTTTC CCCAAAGTCT TTACATTTTC TTGTGTGTGA TAGCAACAAA AGTCACATAC
  ATGTGAGCCA TAAGACCTGG TGACAGTTCA CATCTTCTGA GTGTGTTGAT AAAACCTGGG
  GACAGTTCAC ATCCTCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60859404	NES16002367	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50306827					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60859404	NES16002367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150675784 () rs orientation: forward

Symbol	Name	Function Class
Gm43807	predicted gene 43807	within coordinates
Pds5b	PDS5 cohesin associated factor B	Intron