rs50250905 SNP Detail

Summary

• ID
  rs50250905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150999179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATGACA CATCGCTTTC
  TTTCTAATGT TTATTTGTTT AAGATTTTGA AAACTATTGT CAGAACAGTA TATTCTGAAG
  CTGAATCGCA GCCGTCTGCC TTAGAAGTAA AATTCACACT GAATTATTTA ATTAGTTCTA
  TACCAGATAA ATTATGTTTG GTGTTTTCTG AATCAAAACA ACTCTTATCA GGGCATTTGA
  Y
  GTGGTTCTTA GTAGATACCA GATTGTTTAA TCCATGCTAC TCAACACGTT GCTGTGTTTA
  GATTTGTTGC TACAAGGATG ATTCCGTGGC AGTTTTATTA ATGTTTATTA TTTGCATGTC
  TATGTTCCCG TGTATCTGGT TATACAATGC CTGCAGGCAC ACGAACCATG CCTTATTTAG
  AAGCCAGTGG AGTCTTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136092100	ENSMUSSNP4916922	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50250905					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150999179 () rs orientation: forward

Symbol	Name	Function Class
4930555A03Rik	RIKEN cDNA 4930555A03 gene	620 bp upstream
Rr587386	regulatory region 587386	463 bp proximal
Rr587387	regulatory region 587387	905 bp proximal
Rr587388	regulatory region 587388	1587 bp proximal
Tssr1093	transcription start site region 1093	977 bp upstream
Tssr1094	transcription start site region 1094	989 bp upstream
Tssr32380	transcription start site region 32380	599 bp upstream
Tssr32381	transcription start site region 32381	661 bp upstream
Tssr32382	transcription start site region 32382	687 bp upstream