rs50198961 SNP Detail

Summary

• ID
  rs50198961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161617550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC CCATCACATT GGTACCAGAA
  Y
  CTTATTAATG AAAAGAAATC ACCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145922265	ENSMUSSNP2615547	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50198961					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161617550 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	1486 bp upstream
Rr421846	regulatory region 421846	1310 bp distal
Rr421847	regulatory region 421847	1571 bp proximal
Tssr14586	transcription start site region 14586	1606 bp upstream
Tssr14587	transcription start site region 14587	1525 bp upstream
Tssr14588	transcription start site region 14588	1510 bp upstream
Tssr14589	transcription start site region 14589	1498 bp upstream
Tssr14590	transcription start site region 14590	1485 bp upstream
Tssr14591	transcription start site region 14591	1475 bp upstream