rs50195472 SNP Detail

Summary

• ID
  rs50195472
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:94237575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC CTTACAGACC ACTTACATCC
  G
  GTGTGGCCAG ATTTTTGGGT CTTAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146954268	ENSMUSSNP987504	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320397654	CHEV_2_94247387	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50195472					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94237575 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	within coordinates
Cpgi11962	CpG island 11962	379 bp distal
Rr561373	regulatory region 561373	1069 bp distal
Rr561374	regulatory region 561374	1077 bp distal
Rr561375	regulatory region 561375	732 bp distal
Rr561376	regulatory region 561376	475 bp distal
Rr561377	regulatory region 561377	507 bp distal
Rr561378	regulatory region 561378	within coordinates
Tssr19003	transcription start site region 19003	468 bp downstream
Tssr19004	transcription start site region 19004	422 bp downstream
Tssr25329	transcription start site region 25329	534 bp upstream
Ttc17	tetratricopeptide repeat domain 17	541 bp upstream