rs50191382 SNP Detail

Summary

• ID
  rs50191382
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGGTACTG AATACTGAAC TCCTTCCTGC CCTGGGCTCC
  TCTGGAAGAG CAGTACATAT TGTTAACCAC TGAGCCGTCT CTCCGGCACC TCTTGTAACA
  M
  TTCTGTTTGG AAGTCCTTCT TTTAGCCTCT TGGCTGCTCT CTAAGAGTCC TGGTTCTCTT
  TCTTGGCGGA GGCTCCAGCA AGGGAAGCTT TTCCACGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147584290	ENSMUSSNP3443320	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50191382					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086720 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1576 bp upstream
Rr373844	regulatory region 373844	1747 bp downstream
Rr373845	regulatory region 373845	1142 bp upstream
Rr564888	regulatory region 564888	1949 bp distal
Rr564889	regulatory region 564889	1204 bp distal
Rr564890	regulatory region 564890	584 bp distal
Rr564891	regulatory region 564891	141 bp distal
Rr564892	regulatory region 564892	within coordinates
Rr564893	regulatory region 564893	709 bp proximal
Tssr20109	transcription start site region 20109	1557 bp upstream