rs50186924 SNP Detail

Summary

• ID
  rs50186924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90415279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTTTTA GTCACAGCAT
  TCCTGAAGCA GAGGTAGGTG GCTCCCTTTG AGTTCGAGGC TAGCCAGGTC TACATAGCAA
  GTTCCAGGAC AGCCACGGCT ACCTAAGAGA AACCCTGTGA GGTGGGGGCT TACGTCCATA
  CAATAGTTAT AAAAATTTCA AAGCTCCAGG ATGGAGAACA TCTGCCAAAG TCTCCAAAAT
  R
  GCAGAATGAG ATGTAGCCAA AGCCTAGGAG TTTGGCTTTC AATAGTTCTT CTCAGCCTGG
  ACTGTATGTG ACTTAGCTGA GGAATGTTTG AAAAAAAAAA AAAAAAGAAA AAGTCCCTCC
  CAAACTAAAC TAAATTCTTG ATGCCTGGAT CCAGACCAAT TAAAGTACAA TCTGGCCATG
  AGGATGGGGT ACAGCAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60424397	NES15924231	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs50186924					SNP	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424397	NES15924231	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90415279 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chtop	chromatin target of PRMT1			Intron
				Noncoding-Transcript-Variant
Cpgi13465	CpG island 13465			789 bp proximal
Gm56783	predicted gene, 56783			992 bp upstream
Rr397813	regulatory region 397813			1404 bp upstream
Rr580381	regulatory region 580381			502 bp proximal
Rr580382	regulatory region 580382			930 bp proximal
Rr580383	regulatory region 580383			1468 bp proximal
Tssr30207	transcription start site region 30207			1105 bp upstream
Tssr30208	transcription start site region 30208			1668 bp upstream
Tssr34235	transcription start site region 34235			1591 bp upstream
Tssr34236	transcription start site region 34236			87 bp downstream
Tssr34237	transcription start site region 34237			755 bp downstream
Tssr34238	transcription start site region 34238			1484 bp downstream
Tssr34239	transcription start site region 34239			1545 bp downstream