rs50169772 SNP Detail

Summary

• ID
  rs50169772
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150595438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCTGACC TCAAACCTAA CAGAGATCTG CCTGCCTCTG
  CCTCCCAAGG GTTGAGATTA AAGGTGAGTG GCACCACGCT TGCCTAAGAA GCCAGGGCCA
  M
  AGATTTGCTT TTTTTTTTTT TAAGACCTAT CTAGCTCTTC TGTTCTGTCC TTGCTGGGAA
  CATTGAAGTT GTATAGGAGA GTTCCCAAGG CTTAGTGGAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	NZW/LacJ
ss60859587	NES15988757	PERLEGEN	MM_PANEL2	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	NZW/LacJ
rs50169772					SNP	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60859587	NES15988757	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150595438 () rs orientation: forward

Symbol	Name	Function Class
Gm40353	predicted gene, 40353	Intron
Pds5b	PDS5 cohesin associated factor B	1766 bp upstream
Rr399544	regulatory region 399544	1629 bp upstream
Rr625790	regulatory region 625790	1276 bp proximal
Rr625791	regulatory region 625791	1716 bp proximal
Rr625792	regulatory region 625792	1865 bp proximal
Tssr49955	transcription start site region 49955	1779 bp upstream
Tssr49956	transcription start site region 49956	1873 bp upstream
Tssr49957	transcription start site region 49957	1911 bp upstream