rs50165195 SNP Detail

Summary

• ID
  rs50165195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGATTCCC CCGAAGCTGG CGTTACAGGC GGTGAGCCAC
  CCACTACAGG TACTGAATAC TGAACTCCTT CCTGCCCTGG GCTCCTCTGG AAGAGCAGTA
  Y
  ATATTGTTAA CCACTGAGCC GTCTCTCCGG CACCTCTTGT AACACTTCTG TTTGGAAGTC
  CTTCTTTTAG CCTCTTGGCT GCTCTCTAAG AGTCCTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147584280	ENSMUSSNP3640948	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50165195					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086675 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1621 bp upstream
Rr373844	regulatory region 373844	1702 bp downstream
Rr373845	regulatory region 373845	1187 bp upstream
Rr564888	regulatory region 564888	1904 bp distal
Rr564889	regulatory region 564889	1159 bp distal
Rr564890	regulatory region 564890	539 bp distal
Rr564891	regulatory region 564891	96 bp distal
Rr564892	regulatory region 564892	within coordinates
Rr564893	regulatory region 564893	754 bp proximal
Tssr20109	transcription start site region 20109	1602 bp upstream