rs50162021 SNP Detail

Summary

• ID
  rs50162021
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:53047097 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCAG CAGATGTTGG GAATTACATA
  G
  ACTCACAAGT GGTCACAGTA CTGTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss139514204	ENSMUSSNP4698221	ENSEMBL	ENSEMBL_Sanger	r	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs50162021					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:53047097 () rs orientation: reverse

Symbol	Name	Function Class
Rr491951	regulatory region 491951	1047 bp proximal
Rr491952	regulatory region 491952	1134 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcra-V22.3	T cell receptor alpha, variable 22.3	1363 bp proximal
Tcra-V22.4	T cell receptor alpha, variable 22.4	1360 bp proximal
Trav10d	T cell receptor alpha variable 10D	1357 bp upstream