rs50120391 SNP Detail

Summary

• ID
  rs50120391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121078231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGTCTGA TTAACCCAAC AATAGACATT TGTGGATGGG
  AAGTCCAAGA ATTTAGTAGT TGCTCAGTCC CACGAGGCTG GGTGGGACTT CTGCATAAAC
  R
  GCAGGAATTC TGTATAAACA GCATTTTTAG TTACCCTGCT CCTGGTGAGG GTGCTGGTTA
  TTATTCTGGA CCTTCTTTCT TCAGCTCTTC CACTTGGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135717531	ENSMUSSNP4722102	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50120391					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121078231 () rs orientation: forward

Symbol	Name	Function Class
Rr584034	regulatory region 584034	712 bp proximal
Rr584035	regulatory region 584035	1896 bp proximal
Tlcd4	TLC domain containing 4	1475 bp upstream
Tssr35409	transcription start site region 35409	1552 bp upstream
Tssr35410	transcription start site region 35410	1524 bp upstream
Tssr35411	transcription start site region 35411	1479 bp upstream