rs50118740 SNP Detail

Summary

• ID
  rs50118740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148084076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGACTC ATCCGGAGGC
  GACAGTGTGA ACTTGCACAG ATTTCAGACT TCAAGGAGAG ATTGGCCAAC CCAAATTGGT
  TGCCTACAAC CCCCAGCTTT CTCAAAGGGC TCTCTTTTTC TATCTTAGAG AAAACATCAC
  CGCAGACACC TCTTGTGACT TCCAGCCACA TGACAACTCC ACCAGGCAGC CACAGGGTCA
  R
  TGGGCGTGGA AGTCTTCCAA TAGCCCATTA AGACGGTCAG AAAGCAGAGA GCAGCAGAAA
  ATGCACACAC TTATCACACA CACAAAGCAT ACATATGTCG AAAATGGCTA CACTGGGGTG
  TGGAGACCAC TTGTTAAAGG TGGACTGCCT GCTCATGCTC CTGAGGCTGC CAGAAGAATT
  CATGGCTCAC TTCCTTGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147989368	ENSMUSSNP3930712	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50118740					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148084076 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	1472 bp downstream
Nppa	natriuretic peptide type A	1103 bp upstream
Rr407043	regulatory region 407043	306 bp proximal
Rr604546	regulatory region 604546	613 bp proximal
Rr604547	regulatory region 604547	1792 bp proximal
Tssr40239	transcription start site region 40239	1014 bp upstream
Tssr40240	transcription start site region 40240	1116 bp upstream
Tssr40241	transcription start site region 40241	1472 bp upstream
Tssr40242	transcription start site region 40242	1706 bp upstream