rs50108627 SNP Detail

Summary

• ID
  rs50108627
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138918451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACATGCTG TGGATCAGAG AGGTCCCTAT GCTTGGACAG
  CAAGCACTTT ACCCACAGTG CACTTCCCTA GGCCCAATAT GTATGCTTTA AAAAATTCCC
  S
  GGTGTGTGTG TGTGTACATG TGTTTTATGT CTGTTCCCAT GCAGGAAGGC ATGTATGTGG
  GAAACTGAGG GTAACCTCAG GTATTGTTTC TCTGACATT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147667606	ENSMUSSNP2771834	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss321380204	CHEV_4_138747055	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50108627					SNP	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138918451 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	712 bp downstream
Capzb	capping actin protein of muscle Z-line subunit beta	1759 bp upstream
Cpgi15162	CpG island 15162	1205 bp proximal
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	496 bp proximal
Rr603134	regulatory region 603134	1567 bp proximal
Rr603135	regulatory region 603135	1795 bp proximal
Rr603136	regulatory region 603136	1957 bp proximal
Tssr39900	transcription start site region 39900	1777 bp upstream
Tssr39901	transcription start site region 39901	1802 bp upstream
Tssr39902	transcription start site region 39902	1826 bp upstream
Tssr44214	transcription start site region 44214	1315 bp downstream
Tssr44215	transcription start site region 44215	1474 bp downstream
Tssr44216	transcription start site region 44216	1501 bp downstream
Tssr44217	transcription start site region 44217	1524 bp downstream