rs50101849 SNP Detail

Summary

• ID
  rs50101849
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3442912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTTTGT TGTGACAGTT
  TTGCTTTCTG TTCTTTTCCC GTTTTTCCTA TGTGTTTGTG CATGTGGTGT GTGTATACGC
  GCCAGTATGT GTGCGGGCAC ACGTGTGTAT GAGTGTGTAT ACCTATGTGC ATATGCATGT
  GGAGGGCTGA AGTTGATATA AGGACAGGCT CCGCCAAGTG CAAAGTTCTA AAGTCCCAGG
  W
  GCTTGGAGGA ACTACCTATT GCCGAGGCTC TGCCCCCTTC CGGGCCCCGC CCCTCTGGGG
  ACGGCCTACT CATGCGCAGC TTGGTCTCGC ACTGCATACC GCTTCCGGCT CCTAGGAGGC
  CGGGCGGAGA CTGCGAGAGC GACCCGGGAG CCAGCAGGGC GGAGAGCGGC CTGTGAGGGA
  CCCCGCGGAG GTGAGGGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61077161	NES16044709	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50101849					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61077161	NES16044709	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3442912 () rs orientation: forward

Symbol	Name	Function Class
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18	Intron
Cpgi20017	CpG island 20017	within coordinates
Rr381632	regulatory region 381632	within coordinates
Rr658901	regulatory region 658901	within coordinates
Rr658902	regulatory region 658902	27 bp proximal
Rr658903	regulatory region 658903	137 bp proximal
Rr658904	regulatory region 658904	1710 bp proximal
Tssr76040	transcription start site region 76040	85 bp upstream
Tssr76041	transcription start site region 76041	106 bp upstream