rs50089901 SNP Detail

Summary

• ID
  rs50089901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108804552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCTTTTT TTTTGTATAC TGCTCAGGCC TTTGTATCTC
  ACAAAATAAG CTCTCCCAAC CCAAAGAACT TAAATTGTTG CTGGCTGCTC TGTTGTACCC
  Y
  ATCACATTGC AGGGACAATT CTGACCCCAA AATGGAAGGA GAATGGTCCA GGATTTACCT
  AAGTCCTCCC TGTCATTGCC TTCAGGTTGG TGACAGGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133510085	ENSMUSSNP7110792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50089901					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108804552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17816	CpG island 17816	641 bp proximal
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	within coordinates
Rr399822	regulatory region 399822	within coordinates
Rr399823	regulatory region 399823	745 bp upstream
Rr636212	regulatory region 636212	680 bp distal
Rr636213	regulatory region 636213	within coordinates
Rr636214	regulatory region 636214	753 bp proximal
Rr636215	regulatory region 636215	1558 bp proximal
Tssr58099	transcription start site region 58099	917 bp upstream
Tssr58100	transcription start site region 58100	935 bp upstream
Tssr58101	transcription start site region 58101	958 bp upstream
Tssr58102	transcription start site region 58102	971 bp upstream
Tssr58103	transcription start site region 58103	1004 bp upstream
Tssr58104	transcription start site region 58104	1014 bp upstream
Tssr58105	transcription start site region 58105	1042 bp upstream
Tssr58106	transcription start site region 58106	1143 bp upstream
Tssr58107	transcription start site region 58107	1535 bp upstream
Tssr62395	transcription start site region 62395	790 bp downstream