rs50089223 SNP Detail

Summary

• ID
  rs50089223
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:29229457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGTGCCA CCACTGCCCG
  GCCATTTTCT TTAACATAGT TGAGATAATC CTGCCGAAAT CCAATTTCAA GATGATGCTA
  TCAAGTGGTA ATGGAGATTG ACCATCATAC ACGTGTGTAT TGAATATGTG TATCTAGCTA
  TTATGAAACC CAGAAATTTA AAGCACTTCC TAGCATTACA TACAGCATTT AAGAGTACAG
  M
  CTTATGAAAA ACTTGATAAC CACATTAAAT AAATTTGGAC AAATTTTCTT GATGAACCTA
  ACTGAAAATA TTGTCAAGGA AATATTTGAA AATAAGATGT GACAATGCCT TTGAAAGGAC
  AAGGCAGCAC GATCAGATTG ATTTCATCCT GCTCCTGGGA ATAAAAGATG GCACAGCATA
  TTCAAACCAA TAGATGTAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60381465	NES15887234	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50089223					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381465	NES15887234	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29229457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egfem1	EGF-like and EMI domain containing 1			Intron
				Noncoding-Transcript-Variant
Gm38029	predicted gene, 38029			within coordinates
Rr574662	regulatory region 574662			1567 bp proximal