rs50084186 SNP Detail

Summary

• ID
  rs50084186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64658670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTACAC CTTTCCCAGT
  TTCAGCTCTT ACCTTCCCTG GAAGGCCATT GTAAACTCTA GTACTTCTAA AGACAAGGGC
  TGCGGTGGGG TGAGTCAGAA GTGGAGCCAG AGAAGGAAAG CTAAGGACCT AGGGAACACC
  AGAGAGAGAG GTGGCCCTGA GACCCCTTGA TTTTCCCTAA CTTTGCCTAA GAACAAATAA
  Y
  CTAACCCTGA CTACACTCAC CACCTTCTCT GGGTCCCTTG AGGGACCCTG TGAGTGAGGA
  AGGTGGCTGA ACAGTTTTGA TTCCTCACAG TGGTGTGTTT CCTCCTTGTA CTGAGAGAAC
  TCAGCTCGCC AGCATTTTTG GCTTCTACTC ACTCCTCATT CGGATGGAGC CCAGAAACTC
  GGGGCACCGG ACTGGAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss61173085	NES16687272	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs50084186					SNP	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173085	NES16687272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64658670 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr378042	regulatory region 378042	within coordinates
Rr612037	regulatory region 612037	1869 bp distal
Rr612038	regulatory region 612038	127 bp distal