rs50079613 SNP Detail

Summary

• ID
  rs50079613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64656205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT TTAAGAGGCT TGGCCAAATG
  Y
  GATGTTTAAA CGATTTCTAT TCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148571195	ENSMUSSNP2722821	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321560886	CHEV_5_64890101	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50079613					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64656205 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr367845	regulatory region 367845	1708 bp downstream
Rr378042	regulatory region 378042	922 bp upstream
Rr612035	regulatory region 612035	1422 bp distal
Rr612036	regulatory region 612036	within coordinates
Rr612037	regulatory region 612037	321 bp proximal
Rr612038	regulatory region 612038	1655 bp proximal