rs50074987 SNP Detail

Summary

• ID
  rs50074987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71157528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAGTGAA AAACACATCT
  CTTTAAAAAA AAAAAAAAAA AAAACATTGC CAGGATCCGG CGAGGAGTGA GAGAACACCC
  GGAACTACAA ACTTTTAGAC AAAAGGTAAG GCGACTGGAA TTCGCCAAGG ACCCCCCACA
  GGGAAAAGCG AGGTGCCAGG GTCTCCTAGA ACATCAACCG CAAAGCCCTG CCCCAGAAAC
  R
  GCACTAGAAA CCACGCGGCG CCTGGGCCGA GCATGGGGTG TCAGGAAGAC AATGAAACTT
  GGAGGCGTAC AAACAAGGCG CTGAGCGTGG TTCTTGACAA CGTGCCAACA GCGTGGCGCG
  GCTCAGCCTC CCCACAACAG CCCCTCGGGT TGTGTCTAGA AGGAAAAGAA CACCAACTGC
  CATCAGAGAC ACAGCCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60272782	NES15767941	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	A		G	G	A	G
ss145887979	ENSMUSSNP1578988	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50074987					SNP	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60272782	NES15767941	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71157528 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56903	predicted gene, 56903			1574 bp downstream
Gm56904	predicted gene, 56904			67 bp upstream
Rr405418	regulatory region 405418			1719 bp upstream
Rr530334	regulatory region 530334			1724 bp distal
Rr530335	regulatory region 530335			within coordinates
Rr530336	regulatory region 530336			145 bp proximal
Rr530337	regulatory region 530337			526 bp proximal
Rr530338	regulatory region 530338			664 bp proximal
Rr530339	regulatory region 530339			1191 bp proximal
Rr530340	regulatory region 530340			1734 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				Noncoding-Transcript-Variant
Tssr145684	transcription start site region 145684			1064 bp downstream
Tssr145685	transcription start site region 145685			346 bp downstream
Tssr145686	transcription start site region 145686			162 bp upstream
Tssr145687	transcription start site region 145687			803 bp upstream
Tssr145688	transcription start site region 145688			1482 bp upstream
Tssr145689	transcription start site region 145689			1872 bp upstream
Tssr149219	transcription start site region 149219			1241 bp upstream
Tssr149220	transcription start site region 149220			708 bp upstream
Tssr149221	transcription start site region 149221			175 bp upstream
Tssr149222	transcription start site region 149222			524 bp downstream
Tssr149223	transcription start site region 149223			542 bp downstream
Tssr149224	transcription start site region 149224			576 bp downstream
Tssr149225	transcription start site region 149225			656 bp downstream
Tssr149226	transcription start site region 149226			685 bp downstream
Tssr149227	transcription start site region 149227			1094 bp downstream
Tssr149228	transcription start site region 149228			1177 bp downstream
Tssr149229	transcription start site region 149229			1223 bp downstream
Tssr149230	transcription start site region 149230			1353 bp downstream
Tssr149231	transcription start site region 149231			1699 bp downstream
Tssr149232	transcription start site region 149232			1742 bp downstream