rs50041226 SNP Detail

Summary

• ID
  rs50041226
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53370660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTCTGC CTGCTATTTA
  CCAGCGAGCC ACAGAAGCGC GAATGCAAAA CCAGACAGGA AAGGAAGAAG GCGGCGCCCG
  CCAGGCAGAC CCAGGCTCTC GCCATCGCGA GGGTCTGGGA GGCGAAAGTC AGCGAGGCCT
  GAAGCCGGCT CTAGGGCAGA GGCAGACTAA AGCACCGGGA AACTCGACCG GAGAACCGCC
  S
  AAGACTAATT CCGGGTGTCC TGCTCCTTGC TCCGCCCCGA GTCAGGCGCC CAGCGAGTGA
  CCCTGGTCCC CACGCCGAGG TGCTCCTGGC CACTAGGATG GCGGCGTCCG CAGATCTTCC
  TGACCTACTT ACTCTTCGCT CCTTTAAACT CACTTTCAAG AAGCAAAACA GAGCACCGAG
  AAACTGAAGA GTTAGGGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss60413050	NES15907410	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs50041226					SNP	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60413050	NES15907410	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53370660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	within coordinates
Nhlrc3	NHL repeat containing 3	mRNA-UTR
Proser1	proline and serine rich 1	556 bp upstream
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	430 bp distal
Rr576697	regulatory region 576697	83 bp proximal
Rr576698	regulatory region 576698	352 bp proximal
Rr576699	regulatory region 576699	438 bp proximal
Tssr29113	transcription start site region 29113	335 bp upstream
Tssr29114	transcription start site region 29114	427 bp upstream
Tssr29115	transcription start site region 29115	455 bp upstream
Tssr29116	transcription start site region 29116	540 bp upstream
Tssr29117	transcription start site region 29117	656 bp upstream
Tssr33269	transcription start site region 33269	7 bp upstream
Tssr33270	transcription start site region 33270	within coordinates