rs49979601 SNP Detail

Summary

• ID
  rs49979601
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125902456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAAGGGC ATGCTTAAAG
  TATAGACTCT CCAATAGCGT TCCAAAAATA GAGGGGGATA TTTTACAGGA TTTGTGGCTG
  GGTTGATTAT CCTTGATAAA ATAACATAGA AAAATACTTT AAGCATTTTA ATAATTTCTT
  GTCAAATCTC TTTCACTTTT AAACAGATAT TTTAAAATAG TAACATGTAA ATGAGTGCTT
  C
  TGGTGTTTTC AAAACCTTTT CCTATGATTC TTCTTGTTCA AAGTAGAAGA AAATAAAGTA
  CCCTCTACTT GCTGTATAAT TAACTAACGA GAGAAAATGT CCATTTTGTT TCATGTGTGC
  TACCTTACAG TTGGGCATTG TTGAACCACA GCTTTCTATT CCCATCCCCC ACTCCTGGCC
  CAGTACTTAG AAACACACTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147494565	ENSMUSSNP5317170	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49979601					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125902456 () rs orientation: forward

Symbol	Name	Function Class
Fam227b	family with sequence similarity 227, member B	Intron
Fgf7	fibroblast growth factor 7	Intron
Rr564314	regulatory region 564314	98 bp proximal