rs49936140 SNP Detail

Summary

• ID
  rs49936140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161617265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCCAGCCC TTCCCCCCGC ACCCTCCCCG
  CCCCACCCTG ATCATCCAGG CCTGCTTTTT CTCACCTGTG ACACATTTCT TATCTTCCCC
  TCCTTCCCTA GTCCCATGGC TGCTCTCCCT GTACCAGATG AGTCTTTTGT GATTTTTATA
  Y
  CTCAACTCCC AGGATTCTTT AGTAATTGTC ATTCTGTCTG TCCACATCTC TTTGTCCTTC
  TTTTGATTAA TTTTTTTTCA TAGAGGATTC AAAATATCAA CACCCTACTG TCCACCAATC
  ACAGGGAAAG AGTTCTAGCT GAAAGAGACG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss60335627	NES15842701	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T		C		T	T
ss145922251	ENSMUSSNP4620207	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
ss320081632	CHEV_1_163719827	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs49936140					SNP	T	T	T	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335627	NES15842701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161617265 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	1201 bp upstream
Rr421846	regulatory region 421846	1025 bp distal
Rr421847	regulatory region 421847	1856 bp proximal
Tssr14586	transcription start site region 14586	1321 bp upstream
Tssr14587	transcription start site region 14587	1240 bp upstream
Tssr14588	transcription start site region 14588	1225 bp upstream
Tssr14589	transcription start site region 14589	1213 bp upstream
Tssr14590	transcription start site region 14590	1200 bp upstream
Tssr14591	transcription start site region 14591	1190 bp upstream